PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0257s0015.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 269aa    MW: 28526.9 Da    PI: 8.8728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0257s0015.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-094066127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                          +kt+lC++f     C++Gd+C+FaHg+
  Sphfalx0257s0015.2.p 40 FKTRLCNRFDTAEGCRFGDKCHFAHGE 66
                          79***********************96 PP

2zf-CCCH39.77.8e-13234258126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ykt+lC ++++ GtC +GdrC+FaHg
  Sphfalx0257s0015.2.p 234 YKTKLCENYSQ-GTCTFGDRCHFAHG 258
                           9**********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6853967IPR000571Zinc finger, CCCH-type
SMARTSM003560.00123966IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-84070IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-134071IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-74066IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.8E-15137216IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.1E-17146215IPR004088K Homology domain, type 1
SMARTSM003222.8E-13146216IPR004087K Homology domain
PROSITE profilePS5008415.011147211IPR004088K Homology domain, type 1
PfamPF000133.6E-12149213IPR004088K Homology domain, type 1
CDDcd001051.86E-14151211No hitNo description
Gene3DG3DSA:4.10.1000.107.7E-17231265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-9232263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.924233260IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7233259IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10234258IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MITSMMALGT GRSLALSFSG TRKVVGGLGP DDQGANLGGF KTRLCNRFDT AEGCRFGDKC  60
HFAHGEIELR KSNNSSLLPL EHDVYSSVDH NRDRGYRGGG MYGADGGRFG TGRERDSGGR  120
FGGASGMGSY REPTPPGMAA AASFGASSTA KISIEASLAG AIIGKGGINA KQICHLTGAK  180
ISIREHESDP TLRNVEMEGS FEQIKQASQM VREVLMHRDN APSRPAGGVG SRNYKTKLCE  240
NYSQGTCTFG DRCHFAHGSA ELREPQRV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001763151.11e-109predicted protein
TrEMBLA9S9S21e-109A9S9S2_PHYPA; Uncharacterized protein
STRINGPP1S59_351V6.11e-118(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-29C3H family protein